http://amc-app1.amc.sara.nl/twiki/bin/view/EBioScience The web for users, groups and offices. TWiki is an Enterprise Collaboration Platform. en-us Copyright 2012 by contributing authors TWiki Administrator [a.c.luyf@amc.uva.nl] The contributing authors of TWiki TWiki http://amc-app1.amc.sara.nl/twiki/bin/view/EBioScience http://amc-app1.amc.sara.nl/twiki/pub/TWiki/TWikiLogos/T-logo-140x40-t.gif http://amc-app1.amc.sara.nl/twiki/bin/view/EBioScience/HealthGrid2012 conference, Amsterdam 2012 (last changed by SilviaOlabarriaga) 2012-05-16T16:01:40Z SilviaOlabarriaga http://amc-app1.amc.sara.nl/twiki/bin/view/EBioScience/VBrowser VBrowser The Virtual Resource Browser (VBrowser) was designed and developed at the Informatics Institute of the University of Amsterdam by Piter de Boer in the VL ... (last changed by MahdiJaghouri) 2012-05-16T11:38:37Z MahdiJaghouri http://amc-app1.amc.sara.nl/twiki/bin/view/EBioScience/MOTEUR MOTEUR What is MOTEUR MOTEUR is a workflow management system developed by the Team, in particular Glatard and Montagnat. For more information check: How to get ... (last changed by MahdiJaghouri) 2012-05-16T11:02:42Z MahdiJaghouri http://amc-app1.amc.sara.nl/twiki/bin/view/EBioScience/GettingStarted Getting Started on the e BioInfra NOTE: we recommend to follow the complete guide from one single computer using the default configurations. This will make prevent ... (last changed by MahdiJaghouri) 2012-05-16T11:00:35Z MahdiJaghouri http://amc-app1.amc.sara.nl/twiki/bin/view/EBioScience/News e BioScience News April 27, 2012 BiG Grid has agreed to fund the Bioinformatics Laboratory at the AMC to continue the development and support of the eBioInfra platform ... (last changed by MarkSantcroos) 2012-05-14T11:48:12Z MarkSantcroos http://amc-app1.amc.sara.nl/twiki/bin/view/EBioScience/WorkflowRepositoryBestPractices Workflow Repository Best Practices Overview Please follow the instructions on this page to compose and store your workflows in a more structured way, so other ... (last changed by MarkSantcroos) 2012-05-13T21:41:36Z MarkSantcroos http://amc-app1.amc.sara.nl/twiki/bin/view/EBioScience/CreatingWorkflows Creating Gwendia workflows This page is a collection of common practice (tips and tricks) to creat workflows that run on the EBioInfra. Useful hints The word ... (last changed by MahdiJaghouri) 2012-05-09T11:38:27Z MahdiJaghouri http://amc-app1.amc.sara.nl/twiki/bin/view/EBioScience/PredtiUserDoc DTI Preprocessing on the e BioinfraGateway Go back to e BioinfraGateway user documentation Introduction This application preprocesses the MRI scans and prepare them ... (last changed by ShayanShahand) 2012-04-23T14:04:17Z ShayanShahand http://amc-app1.amc.sara.nl/twiki/bin/view/EBioScience/EBioInfraGatewayLiferayUserDoc AMC e BioInfra Gateway (Liferay based) DRAFT Introduction The AMC e BioInfra Gateway is a web portal based on Liferay technology. It facilitates access to the ... (last changed by BarberaVanSchaik) 2012-04-18T11:07:59Z BarberaVanSchaik http://amc-app1.amc.sara.nl/twiki/bin/view/EBioScience/DTIAtlasUserDoc DTI Atlas on the e BioinfraGateway Go back to e BioinfraGateway user documentation Video Data Preparation You need to inspect the output data of the DTI Preprocessing ... (last changed by ShayanShahand) 2012-04-06T10:44:58Z ShayanShahand http://amc-app1.amc.sara.nl/twiki/bin/view/EBioScience/EBioinfraGateUserDoc e BioinfraGateway The e Bioinfra Gateway (e BioinfraGateway) is a web application that provides facilitated access to the Grid infrastructure for researchers that ... (last changed by ShayanShahand) 2012-04-06T10:42:30Z ShayanShahand http://amc-app1.amc.sara.nl/twiki/bin/view/EBioScience/BedpostxUserDoc MatthanCaan 2012 04 06 DTI BedpostX processing for probabilistic tractography Go back to e BioinfraGateway user documentation Introduction BedpostX is part of the ... (last changed by ShayanShahand) 2012-04-06T10:40:19Z ShayanShahand http://amc-app1.amc.sara.nl/twiki/bin/view/EBioScience/MoteurAdvanced MOTEUR: Advanced Page This page is intended for advanced users and developers of the e BioInfra. Please read the MOTEUR page first. Details of workflow execution ... (last changed by EvertMouw) 2012-03-20T13:45:56Z EvertMouw http://amc-app1.amc.sara.nl/twiki/bin/view/EBioScience/SaGasw sagasw Overview sagasw (Stand Alone Generic Application Service Wrapper) is a utility that wraps any (non interactive) command line program into a grid job so that ... (last changed by EvertMouw) 2012-03-20T13:45:56Z EvertMouw http://amc-app1.amc.sara.nl/twiki/bin/view/EBioScience/DTIPopulationRegistration MatthanCaan 2012 02 23 DTI Population Registration To do DARTELRegDTI S0 run this matlab binary multi threaded? How many? Should application control no. ... (last changed by MatthanCaan) 2012-03-16T09:52:31Z MatthanCaan http://amc-app1.amc.sara.nl/twiki/bin/view/EBioScience/WorkflowsDTI DTI workflows on EBioScience Documentation on processing of DTI data can be found on leBIC wiki (AMC only, outside AMC). Meeting 09 03 2012 (Paul, Shayan, Matthan ... (last changed by MatthanCaan) 2012-03-09T15:12:40Z MatthanCaan