50 Recent Changes in EBioScience Web retrieved at 09:25 (GMT)
conference, Amsterdam 2012
VBrowser The Virtual Resource Browser (VBrowser) was designed and developed at the Informatics Institute of the University of Amsterdam by Piter de Boer in the VL ...
MOTEUR What is MOTEUR MOTEUR is a workflow management system developed by the Team, in particular Glatard and Montagnat. For more information check: How to get ...
Getting Started on the e BioInfra NOTE: we recommend to follow the complete guide from one single computer using the default configurations. This will make prevent ...
e BioScience News April 27, 2012 BiG Grid has agreed to fund the Bioinformatics Laboratory at the AMC to continue the development and support of the eBioInfra platform ...
Workflow Repository Best Practices Overview Please follow the instructions on this page to compose and store your workflows in a more structured way, so other ...
Creating Gwendia workflows This page is a collection of common practice (tips and tricks) to creat workflows that run on the EBioInfra. Useful hints The word ...
DTI Preprocessing on the e BioinfraGateway Go back to e BioinfraGateway user documentation Introduction This application preprocesses the MRI scans and prepare them ...
AMC e BioInfra Gateway (Liferay based) DRAFT Introduction The AMC e BioInfra Gateway is a web portal based on Liferay technology. It facilitates access to the ...
DTI Atlas on the e BioinfraGateway Go back to e BioinfraGateway user documentation Video Data Preparation You need to inspect the output data of the DTI Preprocessing ...
e BioinfraGateway The e Bioinfra Gateway (e BioinfraGateway) is a web application that provides facilitated access to the Grid infrastructure for researchers that ...
MatthanCaan 2012 04 06 DTI BedpostX processing for probabilistic tractography Go back to e BioinfraGateway user documentation Introduction BedpostX is part of the ...
Statistics for nop EBioScience Web Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors for topic ...
MOTEUR: Advanced Page This page is intended for advanced users and developers of the e BioInfra. Please read the MOTEUR page first. Details of workflow execution ...
sagasw Overview sagasw (Stand Alone Generic Application Service Wrapper) is a utility that wraps any (non interactive) command line program into a grid job so that ...
MatthanCaan 2012 02 23 DTI Population Registration To do DARTELRegDTI S0 run this matlab binary multi threaded? How many? Should application control no. ...
DTI workflows on EBioScience Documentation on processing of DTI data can be found on leBIC wiki (AMC only, outside AMC). Meeting 09 03 2012 (Paul, Shayan, Matthan ...
Tools Services Started Documentation Services Gateway, Documentation Workflow Dashboard: overview of workflows. Dashboard Python: overview ...
Visit Dario Bijker 2 Februari 2012 Beroepsorientatiedag VWO @ AMC Mensen: Antoine van Kampen Evert Mouw Paul Groot Andrel Linnenbank 11:45 ...
e BioScience Web Menu About http://www.bioinformaticslaboratory.nl/twiki/bin/view/EBioScience/PeopleEBioScience People http://www ...
Genome Compare on the e BioinfraGateway Go back to e BioinfraGateway user documentation Introduction This application counts and clusters homologous genes to find ...
Freesurfer on the e BioinfraGateway Go back to e BioinfraGateway user documentation Video Supported Data Format The input data can be in either dicom format or nifti ...
e BioInfrastructure (e BioInfra) The e BioScience Infrastructure (e BioInfra) was initially developed for medical image analysis applications as part of the Medical ...
Workflow Tutorial Step by step introduction to create workflows, and execute these workflows from the Vbrowser GUI with the MOTEUR plugin. Grid certificate Request ...
e BioInfra Advanced Page Here you find more detailed information about the e BioInfra software and services (see fig). Grid and Middleware Services Starting from ...
Documentation This is an unsorted list of handy links and documentation (under construction). Please give us feedback or contribute by editing these pages directly ...
Data from the 1000 genomes project Source data set Experiment data http://www.1000genomes.org/ Data set NA06984 (selected a random individual) Direct link ...
BLAST on the e BioinfraGateway Go back to e BioinfraGateway user documentation Video Supported Input Data Sample Input Data You may download and use the following ...
e BioScience Projects The activities of the e bioscience group are carried out through participation in various projects, which intersect and overlap at the e bioinfra ...
Data Management on the Grid Grid jobs need to access files located remotely. These files can be sent from the workstation to the job and back every time using a mechanism ...
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Parallel MMBE Goals In CT angiography (CTA) scans, the arteries are often obscured by bone. MMBE is a medical imaging algorithm and software for bone removal from ...
Jobs or Workflow Components in matlab TODO: update mcr version number, 64 bits and make doc consistent in the documentation It is possible to run matlab programs ...
eBioCrawler Introduction: The eBioCrawler is composed of a java based agent that screens the logs files, classifies and links the data, and stores it into the data ...
Classification for Omics Data Application R 2.13.0 libraries for windows All libraries in file : R 2.13.0 library CL Desktop.zip should be extracted in the directory ...
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People e BioScience The core of the e bioscience team is composed of: Prof. Dr. Antoine van Kampen SilviaOlabarriaga Mark Santcroos Shayan Shahand ...
Previous members of the e BioScience Team Angela Luyf Daniel Weterbeek Yassene Mohammed Carsten Byrman Martin Stam Paul van Hooft ...
T B Cell Variation on the e BioinfraGateway Go back to e BioinfraGateway user documentation Description The alpha and beta chain of the T cell receptor and the B ...
General Executor Motivation It would be helpful for some researchers to send an executable with the input data to the grid, and specify the command needed to be performed ...
Vacancies in the e BioScience Group The e bioscience group is part of the laboratory of the AMC, which is headed by Prof. Dr. Antoine van Kampen. In our group we do ...
Contact Us! If you wish more information about the research activities of the e bioscience group or to get access to the e BioInfra, please contact us: Bioinformatics ...
From executable to workflow Introduction There are several ways to transcribe a unix command line executable (bash, perl, java,.. ) into a workflow that can be executed ...
GASW The Application Service Wrapper is part of MOTEUR, a workflow management system. GASW is used to automatically wrap non interactive command line linux applications ...
Creating graphics with R on the grid R is a language and environment for statistical computing and graphics. However, if you want to create graphics with R on the ...
Research
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Medical Bioinformatics and e Bioscience http://www.uva.nl Visit Daniel Farkas to the AMC Daniel Farkas visited the the e Bioscience group of the AMC in ...
General Description
Some Useful Scripts Alternatieve WMS # Connect proxy with alternative wms service WMS https://wms.grid.sara.nl:7443/glite wms wmproxy server glite wms job delegate ...
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